NCA theory and models are defined for a single dose event, if you give more than one dose even it will return results from only the last dose for each profile as defined by the sort keys . If you want to analyse this as an NCA then I think you will have to make a compromise of defining this as an infusion only. However I would recommend that you avoid this design in future and understand where the differences may come from.
In the attached project I have performed a number of simulations with clearance of 6L/h and 60L/h (typical and high values for a drug) and NCA's on a very rich profile from the simualtion and one with a more realistic sample schedule.
Subject 1 is set up to be simualtes with the true dosing info and Subject 2 as if the same total amount of drug was all given as a constant infusion 0 to 5 hours. You can see in the table below how some common parameters might vary in their estimation.
I hope this helps, SImon.
PS I'm not sure where you're based but we hold face to face training courses all around the world, the next one in India is
Bengaluru, India – Introduction to Phoenix WinNonlin with IVIVC Toolkit, April 2-4, 2019 – 2 Registrations (Chandramouli Radhakrishnan
and the whole 2019 calendar is here
https://s3.amazonaws.com/certara-training/LMS/website/files/phoenix/schedule/2019+Training+Calendar+by+Location.pdf
Alternatively you can take on demand Training over the web where you will have the same content but you can watch the videos at your own pace, please explore these options by registering here: http://www.certarauniversity.com/lms/